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page #178 of 200:   2-76332672-76332698-GA_expansion_hunter_with_adjacent_loci__max_dist_50bp
LocusId: 2-76332672-76332698-GA
Motif: GA
CanonicalMotif: AG
MotifSize: 2
Genotype: Truth: 16/18
Genotype: ExpansionHunter: with adjacent repeats: 16/18
DiffRepeats: Allele 1: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
Q: Allele 1: ExpansionHunter: with adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: with adjacent repeats: 1.0
Genotype: ExpansionHunter: no adjacent repeats: 18/23
DiffRepeats: Allele 1: ExpansionHunter - Truth: no adjacent repeats: 2.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: no adjacent repeats: 5.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: no adjacent repeats: 7.0
Q: Allele 1: ExpansionHunter: no adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: no adjacent repeats: 1.0
Verdict: both genotypes bad
Notes:
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2-76332672-76332698-GA_expansion_hunter_with_adjacent_loci__max_dist_50bp/CHM1_CHM13_WGS2.2-76332672-76332698-GA;1_adjacent_repeats;max_dist_0bp.svg