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page #164 of 200:   19-48655234-48655252-AG_expansion_hunter_with_adjacent_loci__max_dist_50bp
LocusId: 19-48655234-48655252-AG
Motif: AG
CanonicalMotif: AG
MotifSize: 2
Genotype: Truth: 7/9
Genotype: ExpansionHunter: with adjacent repeats: 7/9
DiffRepeats: Allele 1: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
Q: Allele 1: ExpansionHunter: with adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: with adjacent repeats: 1.0
Genotype: ExpansionHunter: no adjacent repeats: 5/7
DiffRepeats: Allele 1: ExpansionHunter - Truth: no adjacent repeats: -2.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: no adjacent repeats: -2.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: no adjacent repeats: 4.0
Q: Allele 1: ExpansionHunter: no adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: no adjacent repeats: 1.0
Verdict: both genotypes bad
Notes:
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19-48655234-48655252-AG_expansion_hunter_with_adjacent_loci__max_dist_50bp/CHM1_CHM13_WGS2.19-48655234-48655252-AG;1_adjacent_repeats;max_dist_0bp.svg