LocusId: 19-48655234-48655252-AG
Motif: AG
CanonicalMotif: AG
MotifSize: 2
Genotype: Truth: 7/9
Genotype: ExpansionHunter: with adjacent repeats: 7/9
DiffRepeats: Allele 1: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
Q: Allele 1: ExpansionHunter: with adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: with adjacent repeats: 1.0
Genotype: ExpansionHunter: no adjacent repeats: 5/7
DiffRepeats: Allele 1: ExpansionHunter - Truth: no adjacent repeats: -2.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: no adjacent repeats: -2.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: no adjacent repeats: 4.0
Q: Allele 1: ExpansionHunter: no adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: no adjacent repeats: 1.0
Verdict: both genotypes bad
Notes:
19-48655234-48655252-AG_expansion_hunter/CHM1_CHM13_WGS2.19-48655234-48655252-AG.svg
