FlipBook: 15-95446800-95446832-AT_expansion

page #129 of 200: 15-95446800-95446832-AT_expansion_hunter

LocusId: 15-95446800-95446832-AT

Motif: AT

CanonicalMotif: AT

MotifSize: 2

Genotype: Truth: 9/17

Genotype: ExpansionHunter: with adjacent repeats: 5/17

DiffRepeats: Allele 1: ExpansionHunter - Truth: with adjacent repeats: -4.0

DiffRepeats: Allele 2: ExpansionHunter - Truth: with adjacent repeats: 0.0

DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: with adjacent repeats: 4.0

Q: Allele 1: ExpansionHunter: with adjacent repeats: 1.0

Q: Allele 2: ExpansionHunter: with adjacent repeats: 1.0

Genotype: ExpansionHunter: no adjacent repeats: 9/17

DiffRepeats: Allele 1: ExpansionHunter - Truth: no adjacent repeats: 0.0

DiffRepeats: Allele 2: ExpansionHunter - Truth: no adjacent repeats: 0.0

DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: no adjacent repeats: 0.0

Q: Allele 1: ExpansionHunter: no adjacent repeats: 1.0

Q: Allele 2: ExpansionHunter: no adjacent repeats: 1.0

Verdict: both genotypes bad

Notes:

Verdict

Better with adjacent repeats

Worse with adjacent repeats

Both genotypes are low quality

Unclear

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15-95446800-95446832-AT_expansion_hunter/CHM1_CHM13_WGS2.15-95446800-95446832-AT.svg