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page #128 of 200:   15-49181049-49181065-TCCC_expansion_hunter_with_adjacent_loci__max_dist_50bp
LocusId: 15-49181049-49181065-TCCC
Motif: TCCC
CanonicalMotif: AGGG
MotifSize: 4
Genotype: Truth: 4/5
Genotype: ExpansionHunter: with adjacent repeats: 4/5
DiffRepeats: Allele 1: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
Q: Allele 1: ExpansionHunter: with adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: with adjacent repeats: 1.0
Genotype: ExpansionHunter: no adjacent repeats: 3/40
DiffRepeats: Allele 1: ExpansionHunter - Truth: no adjacent repeats: -1.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: no adjacent repeats: 35.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: no adjacent repeats: 36.0
Q: Allele 1: ExpansionHunter: no adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: no adjacent repeats: 1.0
Verdict: both genotypes bad
Notes:
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15-49181049-49181065-TCCC_expansion_hunter_with_adjacent_loci__max_dist_50bp/CHM1_CHM13_WGS2.15-49181049-49181065-TCCC;1_adjacent_repeats;max_dist_0bp.svg