FlipBook: 13-64517615-64517623-AT_expansion

page #101 of 200: 13-64517615-64517623-AT_expansion_hunter

LocusId: 13-64517615-64517623-AT

Motif: AT

CanonicalMotif: AT

MotifSize: 2

Genotype: Truth: 4/5

Genotype: ExpansionHunter: with adjacent repeats: 5/18

DiffRepeats: Allele 1: ExpansionHunter - Truth: with adjacent repeats: 1.0

DiffRepeats: Allele 2: ExpansionHunter - Truth: with adjacent repeats: 13.0

DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: with adjacent repeats: 14.0

Q: Allele 1: ExpansionHunter: with adjacent repeats: 1.0

Q: Allele 2: ExpansionHunter: with adjacent repeats: 1.0

Genotype: ExpansionHunter: no adjacent repeats: 4/5

DiffRepeats: Allele 1: ExpansionHunter - Truth: no adjacent repeats: 0.0

DiffRepeats: Allele 2: ExpansionHunter - Truth: no adjacent repeats: 0.0

DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: no adjacent repeats: 0.0

Q: Allele 1: ExpansionHunter: no adjacent repeats: 1.0

Q: Allele 2: ExpansionHunter: no adjacent repeats: 1.0

Verdict: both genotypes bad

Notes:

Verdict

Better with adjacent repeats

Worse with adjacent repeats

Both genotypes are low quality

Unclear

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13-64517615-64517623-AT_expansion_hunter/CHM1_CHM13_WGS2.13-64517615-64517623-AT.svg