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page #34 of 200:   1-30972447-30972472-GAAGA_expansion_hunter_with_adjacent_loci__max_dist_50bp
LocusId: 1-30972447-30972472-GAAGA
Motif: GAAGA
CanonicalMotif: AAGAG
MotifSize: 5
Genotype: Truth: 1/5
Genotype: ExpansionHunter: with adjacent repeats: 4/5
DiffRepeats: Allele 1: ExpansionHunter - Truth: with adjacent repeats: 3.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: with adjacent repeats: 3.0
Q: Allele 1: ExpansionHunter: with adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: with adjacent repeats: 1.0
Genotype: ExpansionHunter: no adjacent repeats: 1/5
DiffRepeats: Allele 1: ExpansionHunter - Truth: no adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: no adjacent repeats: 0.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: no adjacent repeats: 0.0
Q: Allele 1: ExpansionHunter: no adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: no adjacent repeats: 1.0
Verdict: both genotypes bad
Notes:
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1-30972447-30972472-GAAGA_expansion_hunter_with_adjacent_loci__max_dist_50bp/CHM1_CHM13_WGS2.1-30972447-30972472-GAAGA;3_adjacent_repeats;max_dist_0bp.svg