LocusId: 1-217306375-217306419-ATCT
Motif: ATCT
CanonicalMotif: AGAT
MotifSize: 4
Genotype: Truth: 9/11
Genotype: ExpansionHunter: with adjacent repeats: 18/20
DiffRepeats: Allele 1: ExpansionHunter - Truth: with adjacent repeats: 9.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: with adjacent repeats: 9.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: with adjacent repeats: 18.0
Q: Allele 1: ExpansionHunter: with adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: with adjacent repeats: 1.0
Genotype: ExpansionHunter: no adjacent repeats: 9/11
DiffRepeats: Allele 1: ExpansionHunter - Truth: no adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: no adjacent repeats: 0.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: no adjacent repeats: 0.0
Q: Allele 1: ExpansionHunter: no adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: no adjacent repeats: 1.0
Verdict: worse with adjacent repeats
Notes:
1-217306375-217306419-ATCT_expansion_hunter/CHM1_CHM13_WGS2.1-217306375-217306419-ATCT.svg
