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page #18 of 200:   1-204693060-204693088-GA_expansion_hunter_with_adjacent_loci__max_dist_50bp
LocusId: 1-204693060-204693088-GA
Motif: GA
CanonicalMotif: AG
MotifSize: 2
Genotype: Truth: 12/14
Genotype: ExpansionHunter: with adjacent repeats: 12/14
DiffRepeats: Allele 1: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
Q: Allele 1: ExpansionHunter: with adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: with adjacent repeats: 1.0
Genotype: ExpansionHunter: no adjacent repeats: 14/56
DiffRepeats: Allele 1: ExpansionHunter - Truth: no adjacent repeats: 2.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: no adjacent repeats: 42.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: no adjacent repeats: 44.0
Q: Allele 1: ExpansionHunter: no adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: no adjacent repeats: 1.0
Verdict: both genotypes bad
Notes:
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1-204693060-204693088-GA_expansion_hunter_with_adjacent_loci__max_dist_50bp/CHM1_CHM13_WGS2.1-204693060-204693088-GA;1_adjacent_repeats;max_dist_0bp.svg