FlipBook: 1-152234005-152234017-TA_expansion

page #9 of 200: 1-152234005-152234017-TA_expansion_hunter

LocusId: 1-152234005-152234017-TA

Motif: TA

CanonicalMotif: AT

MotifSize: 2

Genotype: Truth: 7/7

Genotype: ExpansionHunter: with adjacent repeats: 7/7

DiffRepeats: Allele 1: ExpansionHunter - Truth: with adjacent repeats: 0.0

DiffRepeats: Allele 2: ExpansionHunter - Truth: with adjacent repeats: 0.0

DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: with adjacent repeats: 0.0

Q: Allele 1: ExpansionHunter: with adjacent repeats: 1.0

Q: Allele 2: ExpansionHunter: with adjacent repeats: 1.0

Genotype: ExpansionHunter: no adjacent repeats: 7/23

DiffRepeats: Allele 1: ExpansionHunter - Truth: no adjacent repeats: 0.0

DiffRepeats: Allele 2: ExpansionHunter - Truth: no adjacent repeats: 16.0

DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: no adjacent repeats: 16.0

Q: Allele 1: ExpansionHunter: no adjacent repeats: 1.0

Q: Allele 2: ExpansionHunter: no adjacent repeats: 1.0

Verdict: both genotypes bad

Notes:

Verdict

Better with adjacent repeats

Worse with adjacent repeats

Both genotypes are low quality

Unclear

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1-152234005-152234017-TA_expansion_hunter/CHM1_CHM13_WGS2.1-152234005-152234017-TA.svg