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page #8 of 200:   1-14997204-14997256-ATTT_expansion_hunter_with_adjacent_loci__max_dist_50bp
LocusId: 1-14997204-14997256-ATTT
Motif: ATTT
CanonicalMotif: AAAT
MotifSize: 4
Genotype: Truth: 12/12
Genotype: ExpansionHunter: with adjacent repeats: 12/12
DiffRepeats: Allele 1: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
Q: Allele 1: ExpansionHunter: with adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: with adjacent repeats: 1.0
Genotype: ExpansionHunter: no adjacent repeats: 8/12
DiffRepeats: Allele 1: ExpansionHunter - Truth: no adjacent repeats: -4.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: no adjacent repeats: 0.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: no adjacent repeats: 4.0
Q: Allele 1: ExpansionHunter: no adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: no adjacent repeats: 1.0
Verdict: worse with adjacent repeats
Notes:
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1-14997204-14997256-ATTT_expansion_hunter_with_adjacent_loci__max_dist_50bp/CHM1_CHM13_WGS2.1-14997204-14997256-ATTT;1_adjacent_repeats;max_dist_0bp.svg