LocusId: 20-35539253-35539269-TA
Motif: TA
CanonicalMotif: AT
MotifSize: 2
Genotype: Truth: 7/7
Genotype: ExpansionHunter: with adjacent repeats: 7/7
DiffRepeats: Allele 1: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
Q: Allele 1: ExpansionHunter: with adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: with adjacent repeats: 1.0
Genotype: ExpansionHunter: no adjacent repeats: 7/19
DiffRepeats: Allele 1: ExpansionHunter - Truth: no adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: no adjacent repeats: 12.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: no adjacent repeats: 12.0
Q: Allele 1: ExpansionHunter: no adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: no adjacent repeats: 1.0
Verdict: both genotypes bad
Notes:
20-35539253-35539269-TA_expansion_hunter/CHM1_CHM13_WGS2.20-35539253-35539269-TA.svg
