LocusId: 2-4566087-4566127-TCTA
Motif: TCTA
CanonicalMotif: AGAT
MotifSize: 4
Genotype: Truth: 9/10
Genotype: ExpansionHunter: with adjacent repeats: 9/18
DiffRepeats: Allele 1: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: with adjacent repeats: 8.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: with adjacent repeats: 8.0
Q: Allele 1: ExpansionHunter: with adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: with adjacent repeats: 1.0
Genotype: ExpansionHunter: no adjacent repeats: 9/10
DiffRepeats: Allele 1: ExpansionHunter - Truth: no adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: no adjacent repeats: 0.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: no adjacent repeats: 0.0
Q: Allele 1: ExpansionHunter: no adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: no adjacent repeats: 1.0
Verdict: worse with adjacent repeats
Notes:
2-4566087-4566127-TCTA_expansion_hunter/CHM1_CHM13_WGS2.2-4566087-4566127-TCTA.svg
