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page #158 of 200:   18-79969259-79969295-GAGG_expansion_hunter_with_adjacent_loci__max_dist_50bp
LocusId: 18-79969259-79969295-GAGG
Motif: GAGG
CanonicalMotif: AGGG
MotifSize: 4
Genotype: Truth: 8/9
Genotype: ExpansionHunter: with adjacent repeats: 8/9
DiffRepeats: Allele 1: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
Q: Allele 1: ExpansionHunter: with adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: with adjacent repeats: 1.0
Genotype: ExpansionHunter: no adjacent repeats: 9/15
DiffRepeats: Allele 1: ExpansionHunter - Truth: no adjacent repeats: 1.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: no adjacent repeats: 6.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: no adjacent repeats: 7.0
Q: Allele 1: ExpansionHunter: no adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: no adjacent repeats: 1.0
Verdict: both genotypes bad
Notes:
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18-79969259-79969295-GAGG_expansion_hunter_with_adjacent_loci__max_dist_50bp/CHM1_CHM13_WGS2.18-79969259-79969295-GAGG;3_adjacent_repeats;max_dist_0bp.svg