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page #148 of 200:   17-41158501-41158576-GAA_expansion_hunter_with_adjacent_loci__max_dist_50bp
LocusId: 17-41158501-41158576-GAA
Motif: GAA
CanonicalMotif: AAG
MotifSize: 3
Genotype: Truth: 23/23
Genotype: ExpansionHunter: with adjacent repeats: 23/23
DiffRepeats: Allele 1: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
Q: Allele 1: ExpansionHunter: with adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: with adjacent repeats: 0.8403699701308981
Genotype: ExpansionHunter: no adjacent repeats: 23/27
DiffRepeats: Allele 1: ExpansionHunter - Truth: no adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: no adjacent repeats: 4.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: no adjacent repeats: 4.0
Q: Allele 1: ExpansionHunter: no adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: no adjacent repeats: 1.0
Verdict: better with adjacent repeats
Notes:
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17-41158501-41158576-GAA_expansion_hunter_with_adjacent_loci__max_dist_50bp/CHM1_CHM13_WGS2.17-41158501-41158576-GAA;1_adjacent_repeats;max_dist_0bp.svg