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page #146 of 200:   17-38842839-38842855-TCTA_expansion_hunter_with_adjacent_loci__max_dist_50bp
LocusId: 17-38842839-38842855-TCTA
Motif: TCTA
CanonicalMotif: AGAT
MotifSize: 4
Genotype: Truth: 5/5
Genotype: ExpansionHunter: with adjacent repeats: 5/5
DiffRepeats: Allele 1: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
Q: Allele 1: ExpansionHunter: with adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: with adjacent repeats: 1.0
Genotype: ExpansionHunter: no adjacent repeats: 6/7
DiffRepeats: Allele 1: ExpansionHunter - Truth: no adjacent repeats: 1.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: no adjacent repeats: 2.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: no adjacent repeats: 3.0
Q: Allele 1: ExpansionHunter: no adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: no adjacent repeats: 1.0
Verdict: better with adjacent repeats
Notes:
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17-38842839-38842855-TCTA_expansion_hunter_with_adjacent_loci__max_dist_50bp/CHM1_CHM13_WGS2.17-38842839-38842855-TCTA;1_adjacent_repeats;max_dist_0bp.svg