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page #140 of 200:   17-1690667-1690709-GAGGGA_expansion_hunter_with_adjacent_loci__max_dist_50bp
LocusId: 17-1690667-1690709-GAGGGA
Motif: GAGGGA
CanonicalMotif: AGAGGG
MotifSize: 6
Genotype: Truth: 7/9
Genotype: ExpansionHunter: with adjacent repeats: 9/18
DiffRepeats: Allele 1: ExpansionHunter - Truth: with adjacent repeats: 2.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: with adjacent repeats: 9.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: with adjacent repeats: 11.0
Q: Allele 1: ExpansionHunter: with adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: with adjacent repeats: 1.0
Genotype: ExpansionHunter: no adjacent repeats: 7/9
DiffRepeats: Allele 1: ExpansionHunter - Truth: no adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: no adjacent repeats: 0.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: no adjacent repeats: 0.0
Q: Allele 1: ExpansionHunter: no adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: no adjacent repeats: 1.0
Verdict: both genotypes bad
Notes:
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17-1690667-1690709-GAGGGA_expansion_hunter_with_adjacent_loci__max_dist_50bp/CHM1_CHM13_WGS2.17-1690667-1690709-GAGGGA;1_adjacent_repeats;max_dist_0bp.svg