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page #92 of 200:   12-48864428-48864436-GT_expansion_hunter_with_adjacent_loci__max_dist_50bp
LocusId: 12-48864428-48864436-GT
Motif: GT
CanonicalMotif: AC
MotifSize: 2
Genotype: Truth: 4/6
Genotype: ExpansionHunter: with adjacent repeats: 4/6
DiffRepeats: Allele 1: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
Q: Allele 1: ExpansionHunter: with adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: with adjacent repeats: 1.0
Genotype: ExpansionHunter: no adjacent repeats: 6/7
DiffRepeats: Allele 1: ExpansionHunter - Truth: no adjacent repeats: 2.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: no adjacent repeats: 1.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: no adjacent repeats: 3.0
Q: Allele 1: ExpansionHunter: no adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: no adjacent repeats: 1.0
Verdict: both genotypes bad
Notes:
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12-48864428-48864436-GT_expansion_hunter_with_adjacent_loci__max_dist_50bp/CHM1_CHM13_WGS2.12-48864428-48864436-GT;1_adjacent_repeats;max_dist_0bp.svg