LocusId: 11-123105353-123105385-TCCC
Motif: TCCC
CanonicalMotif: AGGG
MotifSize: 4
Genotype: Truth: 4/4
Genotype: ExpansionHunter: with adjacent repeats: 7/8
DiffRepeats: Allele 1: ExpansionHunter - Truth: with adjacent repeats: 3.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: with adjacent repeats: 4.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: with adjacent repeats: 7.0
Q: Allele 1: ExpansionHunter: with adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: with adjacent repeats: 1.0
Genotype: ExpansionHunter: no adjacent repeats: 4/4
DiffRepeats: Allele 1: ExpansionHunter - Truth: no adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: no adjacent repeats: 0.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: no adjacent repeats: 0.0
Q: Allele 1: ExpansionHunter: no adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: no adjacent repeats: 1.0
Verdict: worse with adjacent repeats
Notes:
11-123105353-123105385-TCCC_expansion_hunter/CHM1_CHM13_WGS2.11-123105353-123105385-TCCC.svg
