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page #66 of 200:   11-109151642-109151663-CTCTCTC_expansion_hunter_with_adjacent_loci__max_dist_50bp
LocusId: 11-109151642-109151663-CTCTCTC
Motif: CTCTCTC
CanonicalMotif: AGAGAGG
MotifSize: 7
Genotype: Truth: 2/3
Genotype: ExpansionHunter: with adjacent repeats: 2/3
DiffRepeats: Allele 1: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
Q: Allele 1: ExpansionHunter: with adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: with adjacent repeats: 1.0
Genotype: ExpansionHunter: no adjacent repeats: 3/5
DiffRepeats: Allele 1: ExpansionHunter - Truth: no adjacent repeats: 1.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: no adjacent repeats: 2.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: no adjacent repeats: 3.0
Q: Allele 1: ExpansionHunter: no adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: no adjacent repeats: 1.0
Verdict: both genotypes bad
Notes:
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11-109151642-109151663-CTCTCTC_expansion_hunter_with_adjacent_loci__max_dist_50bp/CHM1_CHM13_WGS2.11-109151642-109151663-CTCTCTC;3_adjacent_repeats;max_dist_0bp.svg