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page #50 of 200:   1-89776233-89776257-GATA_expansion_hunter_with_adjacent_loci__max_dist_50bp
LocusId: 1-89776233-89776257-GATA
Motif: GATA
CanonicalMotif: AGAT
MotifSize: 4
Genotype: Truth: 6/10
Genotype: ExpansionHunter: with adjacent repeats: 6/21
DiffRepeats: Allele 1: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: with adjacent repeats: 11.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: with adjacent repeats: 11.0
Q: Allele 1: ExpansionHunter: with adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: with adjacent repeats: 1.0
Genotype: ExpansionHunter: no adjacent repeats: 6/10
DiffRepeats: Allele 1: ExpansionHunter - Truth: no adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: no adjacent repeats: 0.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: no adjacent repeats: 0.0
Q: Allele 1: ExpansionHunter: no adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: no adjacent repeats: 1.0
Verdict: both genotypes bad
Notes:
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1-89776233-89776257-GATA_expansion_hunter_with_adjacent_loci__max_dist_50bp/CHM1_CHM13_WGS2.1-89776233-89776257-GATA;1_adjacent_repeats;max_dist_0bp.svg