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page #38 of 200:   1-46540379-46540429-CA_expansion_hunter_with_adjacent_loci__max_dist_50bp
LocusId: 1-46540379-46540429-CA
Motif: CA
CanonicalMotif: AC
MotifSize: 2
Genotype: Truth: 21/25
Genotype: ExpansionHunter: with adjacent repeats: 21/25
DiffRepeats: Allele 1: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
Q: Allele 1: ExpansionHunter: with adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: with adjacent repeats: 1.0
Genotype: ExpansionHunter: no adjacent repeats: 21/32
DiffRepeats: Allele 1: ExpansionHunter - Truth: no adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: no adjacent repeats: 7.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: no adjacent repeats: 7.0
Q: Allele 1: ExpansionHunter: no adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: no adjacent repeats: 1.0
Verdict: better with adjacent repeats
Notes:
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1-46540379-46540429-CA_expansion_hunter_with_adjacent_loci__max_dist_50bp/CHM1_CHM13_WGS2.1-46540379-46540429-CA;1_adjacent_repeats;max_dist_0bp.svg