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page #28 of 200:   1-228892052-228892061-TTA_expansion_hunter_with_adjacent_loci__max_dist_50bp
LocusId: 1-228892052-228892061-TTA
Motif: TTA
CanonicalMotif: AAT
MotifSize: 3
Genotype: Truth: 3/4
Genotype: ExpansionHunter: with adjacent repeats: 3/4
DiffRepeats: Allele 1: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: with adjacent repeats: 0.0
Q: Allele 1: ExpansionHunter: with adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: with adjacent repeats: 1.0
Genotype: ExpansionHunter: no adjacent repeats: 3/10
DiffRepeats: Allele 1: ExpansionHunter - Truth: no adjacent repeats: 0.0
DiffRepeats: Allele 2: ExpansionHunter - Truth: no adjacent repeats: 6.0
DiffRepeats: Allele 1 + 2: ExpansionHunter - Truth: no adjacent repeats: 6.0
Q: Allele 1: ExpansionHunter: no adjacent repeats: 1.0
Q: Allele 2: ExpansionHunter: no adjacent repeats: 1.0
Verdict: better with adjacent repeats
Notes:
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1-228892052-228892061-TTA_expansion_hunter_with_adjacent_loci__max_dist_50bp/CHM1_CHM13_WGS2.1-228892052-228892061-TTA;1_adjacent_repeats;max_dist_0bp.svg